Research workbench
Maltodextrin-binding protein with bound maltotriose
Analyse Maltodextrin-binding protein with bound maltotriose in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3MBP
- Type
- protein
- Length
- 370 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.7
- Source
- Escherichia coli
- Molecule
- Maltodextrin-binding protein
- UniProt
- P02928
- Ligands
- GLC
- Pockets
- 3 · best druggability 0.74
Structure
x-ray diffraction · resolution 1.7 · 1 distinct chain · 45% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Maltodextrin-binding protein | protein | 370 | 45% helix, 20% strand | P02928 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 401 | 0.74 | 0.84 | 33 | GLC |
| 2 | 113 | 0.37 | 0.74 | 20 | empty |
| 3 | 58 | 0.32 | 0.76 | 17 | empty |
Compared structures
- 3MBP · Maltodextrin-binding protein with bound maltotriose · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02928
- Elsewhere: RCSB PDB 3MBP · PDBe 3MBP · UniProt P02928
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