Research workbench
Crystal structure of Glutathione transferase dmGSTD1 from Drosophila melanogaster, in complex with glutathione
Analyse Crystal structure of Glutathione transferase dmGSTD1 from Drosophila… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3MAK
- Type
- protein
- Length
- 208 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.8
- Source
- Drosophila melanogaster
- Molecule
- Glutathione S-transferase 1-1
- EC
- 2.5.1.18
- UniProt
- P20432
- Ligands
- GSH
- Pockets
- 1 · best druggability 0.56
Structure
x-ray diffraction · resolution 1.8 · 1 distinct chain · 63% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutathione S-transferase 1-1 (EC 2.5.1.18) | protein | 208 | 63% helix, 8% strand | P20432 |
Ligands and binding sites
- GSH · Glutathione · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 277 | 0.56 | 0.76 | 36 | GSH |
Compared structures
- 3MAK · Crystal structure of glutathione transferase DMGSTD1 from drosophila melanogaster, in… · the same entry in another collection · chain A against A, TM-score 1.00
- P20432 · AlphaFold monomer V2.0 prediction for glutathione S-transferase D1 (P20432) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P20432
- Elsewhere: RCSB PDB 3MAK · PDBe 3MAK · UniProt P20432
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