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Crystal structure of a hypothetical protein from Staphylococcus aureus

Analyse Crystal structure of a hypothetical protein from Staphylococcus aureus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3L20
Type: protein
Length: 299 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.451
Source: Staphylococcus aureus
Molecule: Putative uncharacterized protein
UniProt: Q2FDR5
Pockets: 3 · best druggability 0.56

Structure

x-ray diffraction · resolution 2.451 · 2 distinct chains · 20% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative uncharacterized protein	protein	154	19% helix, 38% strand	Q2FDR5
B	Putative uncharacterized protein	protein	145	20% helix, 41% strand	Q2FDR5

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	332	0.56	0.75	34	empty
2	289	0.54	0.75	32	empty
3	112	0.42	0.76	17	empty

Interfaces

1 interface between chains.

A–B · 1780 Å² buried · 34 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 11 modified (engineered).

Compared structures

3L20 · Crystal structure of a hypothetical protein from staphylococcus aureus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2FDR5
Elsewhere: RCSB PDB 3L20 · PDBe 3L20 · UniProt Q2FDR5

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