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Crystal Structure of the Urea Transporter from Desulfovibrio Vulgaris Bound to 1,3-dimethylurea
Analyse Crystal Structure of the Urea Transporter from Desulfovibrio Vulgaris Bound to… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3K3G
- Type
- protein
- Length
- 331 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.4
- Source
- Desulfovibrio vulgaris
- Molecule
- Urea transporter
- UniProt
- Q72CX3
- Ligands
- MMU, AU
- Pockets
- 2 · best druggability 0.64
Structure
x-ray diffraction · resolution 2.4 · 1 distinct chain · 71% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Urea transporter | protein | 331 | 71% helix, 1% strand | Q72CX3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 254 | 0.64 | 0.81 | 32 | AU, MMU |
| 2 | 311 | 0.63 | 0.79 | 29 | MMU |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 3K3G · Crystal structure of the urea transporter from desulfovibrio vulgaris bound to… · the same entry in another collection · chain A against A, TM-score 1.00
- Q72CX3 · AlphaFold monomer V2.0 prediction for urea transporter DVU1160 (Q72CX3) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q72CX3
- Elsewhere: RCSB PDB 3K3G · PDBe 3K3G · UniProt Q72CX3
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