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Crystal structure of CheC-like superfamily protein (YP_001095400.1) from Shewanella SP. PV-4 at 2.13 A resolution

Analyse Crystal structure of CheC-like superfamily protein (YP_001095400.1) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3IIC
Type: protein
Length: 308 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.13
Source: Shewanella loihica PV-4
Molecule: CheC domain protein
UniProt: A3QI43
Pockets: 1 · best druggability 0.31

Structure

x-ray diffraction · resolution 2.13 · 1 distinct chain · 36% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	CheC domain protein	protein	154	36% helix, 34% strand	A3QI43

Ligands and binding sites

EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	52	0.31	0.76	13	empty

Interfaces

1 interface between chains.

A–B · 1274 Å² buried · 23 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 18 modified (engineered).

Compared structures

3IIC · Crystal structure of chec-like superfamily protein (YP_001095400.1) from shewanella sp.… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A3QI43
Elsewhere: RCSB PDB 3IIC · PDBe 3IIC · UniProt A3QI43

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