Research workbench
Crystal Structure of d(CACGCG).d(CGCGTG) with 10mM MnCl2
Analyse Crystal Structure of d(CACGCG).d(CGCGTG) with 10mM MnCl2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FQ5
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.8
- Molecule
- 5'-D(*CP*AP*CP*GP*CP*G)-3'; 5'-D(*CP*GP*CP*GP*TP*G)-3'
- Ligands
- MN
Structure
x-ray diffraction · resolution 2.8 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | 5'-D(*CP*AP*CP*GP*CP*G)-3' | dna | 6 | — | — |
| B, D | 5'-D(*CP*GP*CP*GP*TP*G)-3' | dna | 6 | — | — |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 2 copies · chains A, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
5 interfaces between chains.
- C–D · 335 Ų buried · 31 hydrogen bonds · nucleic-nucleic
- A–B · 329 Ų buried · 27 hydrogen bonds · nucleic-nucleic
- B–D · 131 Ų buried · 0 hydrogen bonds · nucleic-nucleic
- A–D · 46 Ų buried · 0 hydrogen bonds · nucleic-nucleic
- A–C · 11 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Compared structures
- 3FQ5 · Crystal structure of D(CACGCG).D(CGCGTG) with 10MM MNCL2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3FQ5 · PDBe 3FQ5
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