Research workbench
Crystal structure of novel protein of unknown function (YP_111841.1) from BURKHOLDERIA PSEUDOMALLEI K96243 at 1.90 A resolution
Analyse Crystal structure of novel protein of unknown function (YP_111841.1) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FJV
- Type
- protein
- Length
- 370 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.9
- Source
- Burkholderia pseudomallei K96243
- Molecule
- uncharacterized novel protein
- UniProt
- Q63J81
- Ligands
- CL
- Pockets
- 3 · best druggability 0.71
Structure
x-ray diffraction · resolution 1.9 · 2 distinct chains · 45% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | uncharacterized novel protein | protein | 193 | 44% helix, 22% strand | Q63J81 |
| B | uncharacterized novel protein | protein | 177 | 46% helix, 24% strand | Q63J81 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 732 | 0.71 | 0.77 | 62 | GOL |
| 2 | 116 | 0.43 | 0.77 | 13 | GOL |
| 3 | 92 | 0.40 | 0.78 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1087 Ų buried · 11 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 3FJV · Crystal structure of novel protein of unknown function (YP_111841.1) from burkholderia… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q63J81
- Elsewhere: RCSB PDB 3FJV · PDBe 3FJV · UniProt Q63J81
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