Research workbench
Crystal structure of conserved exported protein from Bacteroides fragilis
Analyse Crystal structure of conserved exported protein from Bacteroides fragilis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3CLW
- Type
- protein
- Length
- 2,949 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.199
- Source
- Bacteroides fragilis
- Molecule
- Conserved exported protein
- UniProt
- Q5LF82
- Pockets
- 20 · best druggability 0.73
Structure
x-ray diffraction · resolution 2.199 · 2 distinct chains · 27% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, F | Conserved exported protein | protein | 492 | 28% helix, 24% strand | Q5LF82 |
| C, D, E | Conserved exported protein | protein | 491 | 27% helix, 25% strand | Q5LF82 |
Pockets
20 pockets found on a 1 Å grid, 14 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1048 | 0.73 | 0.76 | 92 | empty |
| 2 | 396 | 0.68 | 0.81 | 39 | empty |
| 3 | 452 | 0.67 | 0.79 | 43 | empty |
| 4 | 416 | 0.67 | 0.80 | 38 | empty |
| 5 | 406 | 0.67 | 0.80 | 43 | empty |
Interfaces
11 interfaces between chains.
- E–F · 579 Ų buried · 9 hydrogen bonds · protein-protein
- D–F · 575 Ų buried · 11 hydrogen bonds · protein-protein
- B–C · 574 Ų buried · 8 hydrogen bonds · protein-protein
- A–B · 568 Ų buried · 9 hydrogen bonds · protein-protein
- A–C · 564 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 3CLW · Crystal structure of conserved exported protein from bacteroides fragilis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5LF82
- Elsewhere: RCSB PDB 3CLW · PDBe 3CLW · UniProt Q5LF82
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