Research workbench
Long wavelength S-SAD structure of FAM3B PANDER
Analyse Long wavelength S-SAD structure of FAM3B PANDER in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2YOP
- Type
- protein
- Length
- 538 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.3
- Source
- MUS MUSCULUS
- Molecule
- Protein FAM3B
- UniProt
- Q9D309
- Pockets
- 4 · best druggability 0.64
Structure
x-ray diffraction · resolution 2.3 · 3 distinct chains · 13% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein FAM3B | protein | 177 | 12% helix, 34% strand | Q9D309 |
| B | Protein FAM3B | protein | 180 | 14% helix, 34% strand | Q9D309 |
| C | Protein FAM3B | protein | 181 | 14% helix, 34% strand | Q9D309 |
Ligands and binding sites
- GOL · Glycerol · additive · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 349 | 0.64 | 0.79 | 34 | empty |
| 2 | 128 | 0.42 | 0.76 | 21 | empty |
| 3 | 52 | 0.40 | 0.81 | 13 | GOL |
| 4 | 78 | 0.36 | 0.76 | 18 | empty |
Interfaces
2 interfaces between chains.
- A–C · 778 Ų buried · 13 hydrogen bonds · protein-protein
- A–B · 367 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9D309
- Elsewhere: RCSB PDB 2YOP · PDBe 2YOP · UniProt Q9D309
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