Research workbench
Crystal structure of Salmonella enterica serovar typhimurium YcbL
Analyse Crystal structure of Salmonella enterica serovar typhimurium YcbL in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2XF4
- Type
- protein
- Length
- 210 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.3
- Source
- SALMONELLA ENTERICA
- Molecule
- Hydroxyacylglutathione hydrolase
- UniProt
- B5CE28
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.41
Structure
x-ray diffraction · resolution 2.3 · 1 distinct chain · 29% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hydroxyacylglutathione hydrolase | protein | 210 | 29% helix, 28% strand | B5CE28 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 100 | 0.41 | 0.77 | 19 | PG4 |
| 2 | 56 | 0.31 | 0.76 | 15 | empty |
Compared structures
- 2XF4 · Crystal structure of salmonella enterica serovar typhimurium ycbl · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B5CE28
- Elsewhere: RCSB PDB 2XF4 · PDBe 2XF4 · UniProt B5CE28
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