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Inhibition of the HSP90 molecular chaperone in vitro and in vivo by novel, synthetic, potent resorcinylic pyrazole, isoxazole amide analogs

Analyse Inhibition of the HSP90 molecular chaperone in vitro and in vivo by novel… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
2UWD
Type
protein
Length
208 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.9
Source
HOMO SAPIENS
Molecule
Heat shock protein HSP 90-alpha
UniProt
P07900
Ligands
2GG, MG, SO4
Pockets
1 · best druggability 0.58

Structure

x-ray diffraction · resolution 1.9 · 1 distinct chain · 43% helix, 23% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AHeat shock protein HSP 90-alphaprotein20843% helix, 23% strandP07900

Ligands and binding sites

  • 2GG · 5-(5-chloro-2,4-dihydroxyphenyl)-N-ethyl-4-(4-methoxyphenyl)isoxazole-3-carboxamide · ligand · chains A
  • MG · Magnesium ion · metal · 2 copies · chains A
  • SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11820.580.81252GG

Compared structures

  • 2UWD · Inhibition of the HSP90 molecular chaperone in vitro and in vivo by novel, synthetic… · the same entry in another collection · chain A against A, TM-score 1.00
  • P07900 · AlphaFold monomer V2.0 prediction for heat shock protein HSP 90-alpha (P07900) · a predicted model of the same protein · chain A against A, TM-score 0.82

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