Research workbench
Structure of a periplasmic oligogalacturonide binding protein from Yersinia enterocolitica
Analyse Structure of a periplasmic oligogalacturonide binding protein from Yersinia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2UVG
- Type
- protein
- Length
- 401 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.2
- Source
- YERSINIA ENTEROCOLITICA
- Molecule
- ABC type periplasmic sugar-binding protein
- Pockets
- 4 · best druggability 0.41
Structure
x-ray diffraction · resolution 2.2 · 1 distinct chain · 48% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ABC type periplasmic sugar-binding protein | protein | 401 | 48% helix, 15% strand | — |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 89 | 0.41 | 0.78 | 20 | empty |
| 2 | 86 | 0.41 | 0.78 | 19 | empty |
| 3 | 61 | 0.30 | 0.75 | 14 | empty |
| 4 | 72 | 0.30 | 0.73 | 17 | empty |
Compared structures
- 2UVG · Structure of a periplasmic oligogalacturonide binding protein from yersinia enterocolitica · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2UVG · PDBe 2UVG
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