Research workbench
Delta-R306 deacetoxycephalosporin C synthase complexed with iron and 2-oxoglutarate.
Analyse Delta-R306 deacetoxycephalosporin C synthase complexed with iron and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1E5I
- Type
- protein
- Length
- 264 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.1
- Source
- STREPTOMYCES CLAVULIGERUS
- Molecule
- Deacetoxycephalosporin C synthase
- EC
- 1.14.20.1
- UniProt
- P18548
- Ligands
- AKG, FE2
- Pockets
- 1 · best druggability 0.63
Structure
x-ray diffraction · resolution 2.1 · 1 distinct chain · 33% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Deacetoxycephalosporin C synthase (EC 1.14.20.1) | protein | 264 | 33% helix, 26% strand | P18548 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 74 | 0.63 | 0.91 | 21 | FE2, AKG |
Compared structures
- 1E5I · Delta-R306 deacetoxycephalosporin C synthase complexed with iron and 2-oxoglutarate. · the same entry in another collection · chain A against A, TM-score 1.00
- P18548 · AlphaFold monomer V2.0 prediction for deacetoxycephalosporin C synthase (P18548) · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P18548
- Elsewhere: RCSB PDB 1E5I · PDBe 1E5I · UniProt P18548
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