Research workbench
Structure of the sulfur carrier protein SoxY from Chlorobium limicola f thiosulfatophilum
Analyse Structure of the sulfur carrier protein SoxY from Chlorobium limicola f… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2NNC
- Type
- protein
- Length
- 225 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.14
- Source
- Chlorobium limicola
- Molecule
- Sulfur covalently-binding protein
- UniProt
- Q8RLX2
- Ligands
- HDZ, CL, PO4
- Pockets
- 1 · best druggability 0.28
Structure
x-ray diffraction · resolution 2.14 · 2 distinct chains · 14% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sulfur covalently-binding protein | protein | 110 | 11% helix, 53% strand | Q8RLX2 |
| B | Sulfur covalently-binding protein | protein | 115 | 17% helix, 49% strand | Q8RLX2 |
Ligands and binding sites
- HDZ · Nitrogen molecule · ligand · 3 copies · chains A
- CL · Chloride ion · ion · chains A
- PO4 · Phosphate ion · ion · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.28 | 0.74 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 769 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 2NNC · Structure of the sulfur carrier protein soxy from chlorobium limicola F thiosulfatophilum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8RLX2
- Elsewhere: RCSB PDB 2NNC · PDBe 2NNC · UniProt Q8RLX2
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