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NMR structure of Sp140 PHD finger cis conformer

Analyse NMR structure of Sp140 PHD finger cis conformer in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2MD8
Type: protein
Length: 56 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: NOT
Source: Homo sapiens
Molecule: Nuclear body protein SP140
UniProt: Q13342
Ligands: ZN

Structure

solution nmr · resolution NOT · 1 distinct chain · 32% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
C	Nuclear body protein SP140	protein	56	32% helix, 0% strand	Q13342

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

2MD8 · NMR structure of SP140 phd finger cis conformer · the same entry in another collection · chain C against C, TM-score 1.00
Q13342 · AlphaFold monomer V2.0 prediction for nuclear body protein SP140 (Q13342) · a predicted model of the same protein · chain C against A, TM-score 0.34

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q13342
Elsewhere: RCSB PDB 2MD8 · PDBe 2MD8 · UniProt Q13342

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