Research workbench
Structure of a Z-DNA with two different backbone chain conformations. stabilization of the decadeoxyoligonucleotide D(CGTACGTACG) by (CO(NH3)6)3+ binding to the guanine
Analyse Structure of a Z-DNA with two different backbone chain conformations.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1DN8
- Type
- DNA
- Length
- 4 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.5
- Molecule
- DNA (5'-D(*P*CP*GP*TP*AP*CP*GP*TP*AP*CP*G)-3')
- Ligands
- NCO
Structure
x-ray diffraction · resolution 1.5 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA (5'-D(*P*CP*GP*TP*AP*CP*GP*TP*AP*CP*G)-3') | dna | 2 | — | — |
Ligands and binding sites
- NCO · Cobalt hexammine(iii) · ligand · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 118 Ų buried · 12 hydrogen bonds · nucleic-nucleic
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1DN8 · PDBe 1DN8
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