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Crystal structure of fucosyltransferase NodZ from Bradyrhizobium

Analyse Crystal structure of fucosyltransferase NodZ from Bradyrhizobium in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2HHC
Type: protein
Length: 291 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.54
Source: Bradyrhizobium sp.
Molecule: Nodulation fucosyltransferase NodZ
EC: 2.4.1.-
UniProt: Q9AQ17
Ligands: PO4
Pockets: 3 · best druggability 0.42

Structure

x-ray diffraction · resolution 1.54 · 1 distinct chain · 45% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nodulation fucosyltransferase NodZ (EC 2.4.1.-)	protein	291	45% helix, 20% strand	Q9AQ17

Ligands and binding sites

PO4 · Phosphate ion · ion · 3 copies · chains A
TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	119	0.42	0.76	20	empty
2	84	0.33	0.74	17	empty
3	50	0.28	0.75	13	empty

Compared structures

2HHC · Crystal structure of fucosyltransferase nodz from bradyrhizobium · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9AQ17
Elsewhere: RCSB PDB 2HHC · PDBe 2HHC · UniProt Q9AQ17

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