Research workbench

The structure of protein from P. horikoshii at 1.7 angstrom resolution

Analyse The structure of protein from P. horikoshii at 1.7 angstrom resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2E8G
Type: protein
Length: 480 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.7
Source: Pyrococcus horikoshii
Molecule: Hypothetical protein PH0536
UniProt: O58271
Pockets: 7 · best druggability 0.57

Structure

x-ray diffraction · resolution 1.7 · 1 distinct chain · 47% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Hypothetical protein PH0536	protein	240	47% helix, 18% strand	O58271

Pockets

7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	375	0.57	0.74	41	empty
2	312	0.56	0.76	46	empty
3	189	0.47	0.75	22	empty
4	131	0.45	0.77	24	empty
5	111	0.44	0.77	14	empty

Interfaces

1 interface between chains.

A–B · 334 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

2E8G · The structure of protein from P. horikoshii at 1.7 ångström resolution · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O58271
Elsewhere: RCSB PDB 2E8G · PDBe 2E8G · UniProt O58271

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.