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Structure of VIL-xylanase

Analyse Structure of VIL-xylanase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 2D97
Type: protein
Length: 189 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.01
Source: Hypocrea jecorina
Molecule: Endo-1,4-beta-xylanase 2
EC: 3.2.1.8
UniProt: P36217
Pockets: 1 · best druggability 0.58

Structure

x-ray diffraction · resolution 2.01 · 1 distinct chain · 5% helix, 63% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Endo-1,4-beta-xylanase 2 (EC 3.2.1.8)	protein	189	5% helix, 63% strand	P36217

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	267	0.58	0.78	33	empty

Modifications

Observed in the structure: 4 modified (nonstandard).

Compared structures

2D97 · Structure of vil-xylanase · the same entry in another collection · chain A against A, TM-score 1.00
P36217 · AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase 2 (P36217) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P36217
Elsewhere: RCSB PDB 2D97 · PDBe 2D97 · UniProt P36217

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