Research workbench
Chloroperoxidase bromide complex
Analyse Chloroperoxidase bromide complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2CIV
- Type
- protein
- Length
- 299 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.8
- Source
- CALDARIOMYCES FUMAGO
- Molecule
- Chloroperoxidase
- EC
- 1.11.1.10
- UniProt
- P04963
- Ligands
- HEM, MAN, NAG, BMA, MN, BR
- Pockets
- 2 · best druggability 0.83
Structure
x-ray diffraction · resolution 1.8 · 1 distinct chain · 39% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chloroperoxidase (EC 1.11.1.10) | protein | 299 | 39% helix, 5% strand | P04963 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- MAN · alpha-D-mannopyranose · sugar · 12 copies · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A
- BMA · beta-D-mannopyranose · sugar
- MN · Manganese (II) ion · metal · chains A
- BR · Bromide ion · ion · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 381 | 0.83 | 0.91 | 56 | HEM, MAN |
| 2 | 50 | 0.26 | 0.74 | 17 | BR |
Modifications
Observed in the structure: 14 glycan, 1 disulfide, 1 modified (O-glycosylation, N-glycosylation, disulfide, cyclization).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04963
- Elsewhere: RCSB PDB 2CIV · PDBe 2CIV · UniProt P04963
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.