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Crystal structure of the DUF16 domain of MPN010 from Mycoplasma pneumoniae

Analyse Crystal structure of the DUF16 domain of MPN010 from Mycoplasma pneumoniae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
2BA2
Type
protein
Length
242 residues
Chains
3
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.8
Source
Mycoplasma pneumoniae
Molecule
Hypothetical UPF0134 protein MPN010
UniProt
P75103

Structure

x-ray diffraction · resolution 1.8 · 2 distinct chains · 85% helix, 5% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A, CHypothetical UPF0134 protein MPN010protein8184% helix, 5% strandP75103
BHypothetical UPF0134 protein MPN010protein8086% helix, 5% strandP75103

Interfaces

3 interfaces between chains.

  • A–C · 1845 Ų buried · 19 hydrogen bonds · protein-protein
  • B–C · 1801 Ų buried · 18 hydrogen bonds · protein-protein
  • A–B · 1792 Ų buried · 19 hydrogen bonds · protein-protein

Compared structures

  • 2BA2 · Crystal structure of the DUF16 domain of MPN010 from mycoplasma pneumoniae · the same entry in another collection · chain A against A, TM-score 1.00
  • P75103 · AlphaFold monomer V2.0 prediction for UPF0134 protein MPN_010 (P75103) · a predicted model of the same protein · chain A against A, TM-score 0.96

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