Research workbench
110M: Sperm whale myoglobin D122N methyl isocyanide at pH 9.0
Analyse 110M: Sperm whale myoglobin D122N methyl isocyanide at pH 9.0 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 110M
- Type
- protein
- Length
- 154 residues
- Chains
- 1
- Method
- x-ray diffraction
- Authors
- Smith, R.D., Olson, J.S., Phillips Jr., G.N.
- Deposited
- 12/23/97
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.77
- Source
- Physeter catodon
- Molecule
- Myoglobin
- UniProt
- P02185
- Ligands
- HEM, MNC, SO4
- Pockets
- 1 · best druggability 0.73
Structure
x-ray diffraction · resolution 1.77 · 1 distinct chain · 80% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Myoglobin | protein | 154 | 80% helix, 0% strand | P02185 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- MNC · Methyl isocyanide · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 250 | 0.73 | 0.87 | 33 | HEM, MNC |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02185
- Elsewhere: RCSB PDB 110M · PDBe 110M · UniProt P02185
Other records of 110M
- 110M-2 · MolNFT v1 / PDB · Sperm whale myoglobin D122N methyl isocyanide at pH 9.0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.