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Crystal structure of Native Pvs25, an ookinete protein from Plasmodium vivax.
Analyse Crystal structure of Native Pvs25, an ookinete protein from Plasmodium vivax. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1Z27
- Type
- protein
- Length
- 175 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.08
- Source
- Plasmodium vivax
- Molecule
- ookinete surface protein Pvs25
- UniProt
- O96555
- Pockets
- 2 · best druggability 0.58
Structure
x-ray diffraction · resolution 2.08 · 1 distinct chain · 5% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ookinete surface protein Pvs25 | protein | 175 | 5% helix, 41% strand | O96555 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 291 | 0.58 | 0.77 | 31 | empty |
| 2 | 100 | 0.47 | 0.80 | 21 | empty |
Modifications
Observed in the structure: 11 disulfide (disulfide).
Compared structures
- 1Z27 · Crystal structure of native PVS25, an ookinete protein from plasmodium vivax. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O96555
- Elsewhere: RCSB PDB 1Z27 · PDBe 1Z27 · UniProt O96555
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