Research workbench
Crystal Structure of GuaC (BA5705) from Bacillus anthracis at 1.8 A Resolution
Analyse Crystal Structure of GuaC (BA5705) from Bacillus anthracis at 1.8 A Resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1YPF
- Type
- protein
- Length
- 590 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.8
- Source
- Bacillus anthracis
- Molecule
- GMP reductase
- EC
- 1.7.1.7
- UniProt
- Q81JJ9
- Pockets
- 5 · best druggability 0.56
Structure
x-ray diffraction · resolution 1.8 · 2 distinct chains · 39% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | GMP reductase (EC 1.7.1.7) | protein | 295 | 39% helix, 15% strand | Q81JJ9 |
| B | GMP reductase (EC 1.7.1.7) | protein | 295 | 39% helix, 16% strand | Q81JJ9 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 358 | 0.56 | 0.75 | 34 | empty |
| 2 | 224 | 0.49 | 0.75 | 32 | empty |
| 3 | 172 | 0.44 | 0.75 | 24 | empty |
| 4 | 75 | 0.38 | 0.78 | 16 | empty |
| 5 | 63 | 0.36 | 0.78 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 294 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 1YPF · Crystal structure of guac (BA5705) from bacillus anthracis at 1.8 a resolution · the same entry in another collection · chain A against A, TM-score 1.00
- Q81JJ9 · AlphaFold monomer V2.0 prediction for gmp reductase (Q81JJ9) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q81JJ9
- Elsewhere: RCSB PDB 1YPF · PDBe 1YPF · UniProt Q81JJ9
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