Research workbench
X-Ray Crystal Structure of Protein NE0264 from Nitrosomonas europaea. Northeast Structural Genomics Consortium Target NeR5.
Analyse X-Ray Crystal Structure of Protein NE0264 from Nitrosomonas europaea. Northeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1XFS
- Type
- protein
- Length
- 308 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.7
- Source
- Nitrosomonas europaea
- Molecule
- conserved hypothetical protein
- UniProt
- Q82XK1
- Pockets
- 5 · best druggability 0.71
Structure
x-ray diffraction · resolution 1.7 · 2 distinct chains · 27% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | conserved hypothetical protein | protein | 154 | 28% helix, 38% strand | Q82XK1 |
| B | conserved hypothetical protein | protein | 154 | 27% helix, 38% strand | Q82XK1 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 498 | 0.71 | 0.80 | 45 | empty |
| 2 | 393 | 0.68 | 0.80 | 33 | empty |
| 3 | 111 | 0.45 | 0.78 | 22 | empty |
| 4 | 78 | 0.37 | 0.77 | 16 | empty |
| 5 | 86 | 0.31 | 0.73 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 888 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 1XFS · X-ray crystal structure of protein NE0264 from nitrosomonas europaea. northeast… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q82XK1
- Elsewhere: RCSB PDB 1XFS · PDBe 1XFS · UniProt Q82XK1
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