Research workbench
Crystal structure of BchU complexed with S-adenosyl-L-homocysteine and Zn-bacteriopheophorbide d
Analyse Crystal structure of BchU complexed with S-adenosyl-L-homocysteine and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1X1D
- Type
- protein
- Length
- 337 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.7
- Source
- Chlorobium tepidum
- Molecule
- CrtF-related protein
- UniProt
- Q8KGE0
- Ligands
- SAH, ZN, SO4
- Pockets
- 1 · best druggability 0.79
Structure
x-ray diffraction · resolution 2.7 · 1 distinct chain · 48% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CrtF-related protein | protein | 337 | 48% helix, 15% strand | Q8KGE0 |
Ligands and binding sites
- SAH · S-adenosyl-L-homocysteine · ligand · chains A
- ZN · Zinc ion · metal · chains A
- SO4 · Sulfate ion · ion · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1145 | 0.79 | 0.80 | 100 | ZN, SAH |
Compared structures
- 1X1D · Crystal structure of bchu complexed with S-adenosyl-L-homocysteine and… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8KGE0 · AlphaFold monomer V2.0 prediction for bacteriochlorophyllide D C-20 methyltransferase… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8KGE0
- Elsewhere: RCSB PDB 1X1D · PDBe 1X1D · UniProt Q8KGE0
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