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Crystal Structure of Family 30 Carbohydrate Binding Module

Analyse Crystal Structure of Family 30 Carbohydrate Binding Module in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1WMX
Type: protein
Length: 368 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2
Source: Clostridium thermocellum
Molecule: COG3291: FOG: PKD repeat
UniProt: P71140
Ligands: SO4
Pockets: 1 · best druggability 0.58

Structure

x-ray diffraction · resolution 2 · 2 distinct chains · 6% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	COG3291: FOG: PKD repeat	protein	173	5% helix, 43% strand	P71140
B	COG3291: FOG: PKD repeat	protein	195	7% helix, 39% strand	P71140

Ligands and binding sites

SO4 · Sulfate ion · ion · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	424	0.58	0.74	32	empty

Interfaces

1 interface between chains.

A–B · 698 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

1WMX · Crystal structure of family 30 carbohydrate binding module · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P71140
Elsewhere: RCSB PDB 1WMX · PDBe 1WMX · UniProt P71140

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