Research workbench
X-ray structure of truncated oxygen-avid haemoglobin from Bacillus subtilis
Analyse X-ray structure of truncated oxygen-avid haemoglobin from Bacillus subtilis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1UX8
- Type
- protein
- Length
- 118 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.15
- Source
- BACILLUS SUBTILIS
- Molecule
- Yjbi protein
- UniProt
- O31607
- Ligands
- HEM, CYN, CL
- Pockets
- 1 · best druggability 0.76
Structure
x-ray diffraction · resolution 2.15 · 1 distinct chain · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Yjbi protein | protein | 118 | 72% helix, 0% strand | O31607 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- CYN · Cyanide ion · ion · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 277 | 0.76 | 0.88 | 24 | HEM, CYN |
Compared structures
- 1UX8 · X-ray structure of truncated oxygen-avid haemoglobin from bacillus subtilis · the same entry in another collection · chain A against A, TM-score 1.00
- O31607 · AlphaFold monomer V2.0 prediction for group 2 truncated hemoglobin yjbi (O31607) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O31607
- Elsewhere: RCSB PDB 1UX8 · PDBe 1UX8 · UniProt O31607
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