Research workbench
Crystal structure of the quorum-sensing protein TraM from Agrobacterium tumefaciens at 1.65 Ang. resolution
Analyse Crystal structure of the quorum-sensing protein TraM from Agrobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1US6
- Type
- protein
- Length
- 189 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.65
- Source
- AGROBACTERIUM TUMEFACIENS
- Molecule
- Transcriptional repressor tram
- UniProt
- Q57471
- Pockets
- 1 · best druggability 0.61
Structure
x-ray diffraction · resolution 1.65 · 2 distinct chains · 69% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transcriptional repressor tram | protein | 90 | 72% helix, 0% strand | Q57471 |
| B | Transcriptional repressor tram | protein | 99 | 66% helix, 5% strand | Q57471 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 234 | 0.61 | 0.81 | 30 | empty |
Interfaces
1 interface between chains.
- A–B · 1087 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 1US6 · Crystal structure of the quorum-sensing protein tram from agrobacterium tumefaciens at… · the same entry in another collection · chain A against A, TM-score 1.00
- Q57471 · AlphaFold monomer V2.0 prediction for transcriptional repressor tram (Q57471) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q57471
- Elsewhere: RCSB PDB 1US6 · PDBe 1US6 · UniProt Q57471
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