Research workbench
Structure of 80alpha portal protein expressed in E. coli
Analyse Structure of 80alpha portal protein expressed in E. coli in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 8V8B
- Type
- protein
- Length
- 476 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.4
- Source
- Staphylococcus phage 80alpha
- Molecule
- Portal protein
- Pockets
- 5 · best druggability 0.60
Structure
electron microscopy · resolution 2.4 · 1 distinct chain · 44% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Portal protein | protein | 476 | 44% helix, 18% strand | — |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 283 | 0.60 | 0.79 | 31 | empty |
| 2 | 95 | 0.50 | 0.82 | 16 | empty |
| 3 | 96 | 0.41 | 0.77 | 17 | empty |
| 4 | 76 | 0.36 | 0.77 | 16 | empty |
| 5 | 53 | 0.28 | 0.75 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 8V8B · PDBe 8V8B
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