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Structure of immature HTLV-1 CA-NTD from in vitro assembled MA126-CANC tubes: axis angle 10 degrees

Analyse Structure of immature HTLV-1 CA-NTD from in vitro assembled MA126-CANC tubes… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 8PUD
Type: protein
Length: 339 residues
Chains: 3
Method: electron microscopy
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 4.5
Source: Human T-cell leukemia virus type I
Molecule: Gag protein (Fragment)
UniProt: X5GX59
Pockets: 3 · best druggability 0.28

Structure

electron microscopy · resolution 4.5 · 1 distinct chain · 67% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Gag protein (Fragment)	protein	113	67% helix, 0% strand	X5GX59

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	75	0.28	0.73	18	empty
2	61	0.24	0.72	16	empty
3	52	0.23	0.72	14	empty

Interfaces

2 interfaces between chains.

A–B · 24 Å² buried · 0 hydrogen bonds · protein-protein
A–C · 14 Å² buried · 0 hydrogen bonds · protein-protein

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt X5GX59
Elsewhere: RCSB PDB 8PUD · PDBe 8PUD · UniProt X5GX59

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