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Structure of the murine LYVE-1 (lymphatic vessel endothelial receptor-1) hyaluronan binding domain in an unliganded state
Analyse Structure of the murine LYVE-1 (lymphatic vessel endothelial receptor-1)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 8ORX
- Type
- protein
- Length
- 115 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.54
- Source
- Mus musculus
- Molecule
- Lymphatic vessel endothelial hyaluronic acid receptor 1
- UniProt
- Q8BHC0
- Ligands
- NAG
Structure
x-ray diffraction · resolution 1.54 · 1 distinct chain · 17% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lymphatic vessel endothelial hyaluronic acid receptor 1 | protein | 115 | 17% helix, 31% strand | Q8BHC0 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 3 disulfide, 2 glycan (disulfide, N-glycosylation).
Compared structures
- Q8BHC0 · AlphaFold monomer V2.0 prediction for lymphatic vessel endothelial hyaluronic acid… · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8BHC0
- Elsewhere: RCSB PDB 8ORX · PDBe 8ORX · UniProt Q8BHC0
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