Research workbench
HTLV-1 capsid protein full-length
Analyse HTLV-1 capsid protein full-length in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 8ERI
- Type
- protein
- Length
- 618 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.25
- Source
- HTLV-1 subtype C
- Molecule
- capsid protein p24
- UniProt
- U3RC60
- Pockets
- 6 · best druggability 0.58
Structure
x-ray diffraction · resolution 2.25 · 2 distinct chains · 56% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | capsid protein p24 | protein | 206 | 57% helix, 2% strand | U3RC60 |
| C | capsid protein p24 | protein | 206 | 55% helix, 2% strand | U3RC60 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 465 | 0.58 | 0.74 | 70 | empty |
| 2 | 66 | 0.46 | 0.83 | 23 | empty |
| 3 | 157 | 0.43 | 0.74 | 31 | empty |
| 4 | 135 | 0.42 | 0.75 | 29 | empty |
| 5 | 114 | 0.40 | 0.75 | 19 | empty |
Interfaces
2 interfaces between chains.
- B–C · 578 Ų buried · 5 hydrogen bonds · protein-protein
- A–B · 526 Ų buried · 5 hydrogen bonds · protein-protein
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt U3RC60
- Elsewhere: RCSB PDB 8ERI · PDBe 8ERI · UniProt U3RC60
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