Research workbench
1.6 A crystal structure of the lipocalin dog allergen Can f 1 with the C118S mutation
Analyse 1.6 A crystal structure of the lipocalin dog allergen Can f 1 with the C118S… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 8EPU
- Type
- protein
- Length
- 145 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.6
- Source
- Canis lupus familiaris
- Molecule
- Major allergen Can f 1
- UniProt
- O18873
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · resolution 1.6 · 1 distinct chain · 9% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Major allergen Can f 1 | protein | 145 | 9% helix, 48% strand | O18873 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 288 | 0.70 | 0.84 | 36 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- O18873 · AlphaFold monomer V2.0 prediction for major allergen can F 1 (O18873) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O18873
- Elsewhere: RCSB PDB 8EPU · PDBe 8EPU · UniProt O18873
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