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High resolution crystal structure of dimeric SUDV VP40

Analyse High resolution crystal structure of dimeric SUDV VP40 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 8B3X
Type: protein
Length: 261 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.531
Source: Sudan ebolavirus
Molecule: Matrix protein VP40
UniProt: Q5XX06
Pockets: 2 · best druggability 0.78

Structure

x-ray diffraction · resolution 1.531 · 1 distinct chain · 18% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Matrix protein VP40	protein	261	18% helix, 32% strand	Q5XX06

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	452	0.78	0.86	38	empty
2	126	0.43	0.76	27	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5XX06
Elsewhere: RCSB PDB 8B3X · PDBe 8B3X · UniProt Q5XX06

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