Research workbench
X-ray crystal structure of SLPYL1-NIO complex
Analyse X-ray crystal structure of SLPYL1-NIO complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7Z1S
- Type
- protein
- Length
- 191 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.65
- Source
- Solanum lycopersicum
- Molecule
- SlPYL1-NIO
- UniProt
- A0A3Q7HTY9
- Ligands
- NIO
- Pockets
- 2 · best druggability 0.72
Structure
x-ray diffraction · resolution 1.65 · 1 distinct chain · 31% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SlPYL1-NIO | protein | 191 | 31% helix, 35% strand | A0A3Q7HTY9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 154 | 0.72 | 0.90 | 26 | NIO |
| 2 | 61 | 0.33 | 0.77 | 14 | empty |
Compared structures
- 7Z1S · X-ray crystal structure of SLPYL1-nio complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A3Q7HTY9
- Elsewhere: RCSB PDB 7Z1S · PDBe 7Z1S · UniProt A0A3Q7HTY9
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