Research workbench
SARS-CoV-2 Mu variant spike(close state)
Analyse SARS-CoV-2 Mu variant spike(close state) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7YBJ
- Type
- protein
- Length
- 3,282 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.73
- Source
- Severe acute respiratory syndrome coronavirus 2
- Molecule
- Spike glycoprotein
- UniProt
- P0DTC2
- Pockets
- 20 · best druggability 0.83
Structure
electron microscopy · resolution 3.73 · 1 distinct chain · 23% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Spike glycoprotein | protein | 1094 | 23% helix, 32% strand | P0DTC2 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 959 | 0.83 | 0.84 | 97 | empty |
| 2 | 716 | 0.82 | 0.86 | 86 | empty |
| 3 | 846 | 0.81 | 0.84 | 102 | empty |
| 4 | 390 | 0.81 | 0.90 | 53 | empty |
| 5 | 386 | 0.80 | 0.89 | 46 | empty |
Interfaces
3 interfaces between chains.
- A–C · 5963 Ų buried · 43 hydrogen bonds · protein-protein
- B–C · 5909 Ų buried · 45 hydrogen bonds · protein-protein
- A–B · 5896 Ų buried · 39 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 42 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7YBJ · PDBe 7YBJ · UniProt P0DTC2
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.