Research workbench
The Al-bound AtALMT1 structure at pH 5 (ALMT1Al/pH5)
Analyse The Al-bound AtALMT1 structure at pH 5 (ALMT1Al/pH5) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7VQ7
- Type
- protein
- Length
- 778 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.6
- Source
- Arabidopsis thaliana
- Molecule
- Aluminum-activated malate transporter 1
- UniProt
- Q9SJE9
- Ligands
- AL
- Pockets
- 12 · best druggability 0.77
Structure
electron microscopy · resolution 3.6 · 1 distinct chain · 79% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Aluminum-activated malate transporter 1 | protein | 389 | 79% helix, 1% strand | Q9SJE9 |
Ligands and binding sites
- AL · Aluminum ion · metal · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
12 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 898 | 0.77 | 0.80 | 83 | empty |
| 2 | 414 | 0.64 | 0.78 | 39 | empty |
| 3 | 402 | 0.62 | 0.77 | 43 | empty |
| 4 | 216 | 0.53 | 0.77 | 31 | empty |
| 5 | 152 | 0.52 | 0.79 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 3099 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 7VQ7 · The al-bound ATALMT1 structure at pH 5 (ALMT1AL/PH5) · the same entry in another collection · chain A against A, TM-score 1.00
- Q9SJE9 · AlphaFold monomer V2.0 prediction for aluminum-activated malate transporter 1 (Q9SJE9) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9SJE9
- Elsewhere: RCSB PDB 7VQ7 · PDBe 7VQ7 · UniProt Q9SJE9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.