Research workbench

Structure of AdaV

Analyse Structure of AdaV in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7V52
Type: protein
Length: 267 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.38
Source: Actinomadura sp. ATCC 39365
Molecule: AdaV
UniProt: A0A1U8X168
Ligands: FE
Pockets: 2 · best druggability 0.48

Structure

x-ray diffraction · resolution 2.38 · 1 distinct chain · 35% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	AdaV	protein	267	35% helix, 26% strand	A0A1U8X168

Ligands and binding sites

FE · Fe (III) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	125	0.48	0.79	21	FE
2	86	0.43	0.79	25	empty

Compared structures

7V52 · Structure of adav · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1U8X168
Elsewhere: RCSB PDB 7V52 · PDBe 7V52 · UniProt A0A1U8X168

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.