Research workbench
The crystal structure of the apo form of KFDV NS3H
Analyse The crystal structure of the apo form of KFDV NS3H in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7V4Q
- Type
- protein
- Length
- 439 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.91
- Source
- Kyasanur Forest disease virus
- Molecule
- Serine protease NS3
- EC
- 3.4.21.91, 3.6.1.15, 3.6.4.13
- UniProt
- D7RF80
- Pockets
- 4 · best druggability 0.82
Structure
x-ray diffraction · resolution 1.91 · 1 distinct chain · 36% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serine protease NS3 (EC 3.4.21.91, 3.6.1.15, 3.6.4.13) | protein | 439 | 36% helix, 17% strand | D7RF80 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1022 | 0.82 | 0.83 | 92 | empty |
| 2 | 207 | 0.60 | 0.82 | 42 | empty |
| 3 | 105 | 0.47 | 0.80 | 22 | empty |
| 4 | 128 | 0.44 | 0.77 | 33 | empty |
Compared structures
- 7V4Q · The crystal structure of the apo form of kfdv NS3H · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D7RF80
- Elsewhere: RCSB PDB 7V4Q · PDBe 7V4Q · UniProt D7RF80
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