Research workbench
Crystal structure of Pisum sativum vicilin
Analyse Crystal structure of Pisum sativum vicilin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7U1I
- Type
- protein
- Length
- 1,081 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.1
- Source
- Pisum sativum
- Molecule
- Vicilin
- UniProt
- Q702P1
- Pockets
- 13 · best druggability 0.79
Structure
x-ray diffraction · resolution 3.1 · 3 distinct chains · 18% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vicilin | protein | 362 | 18% helix, 42% strand | Q702P1 |
| B | Vicilin | protein | 360 | 18% helix, 45% strand | Q702P1 |
| C | Vicilin | protein | 359 | 17% helix, 40% strand | Q702P1 |
Pockets
13 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 117 | 0.79 | 0.97 | 25 | empty |
| 2 | 112 | 0.79 | 0.98 | 24 | empty |
| 3 | 311 | 0.74 | 0.86 | 40 | empty |
| 4 | 977 | 0.69 | 0.74 | 106 | empty |
| 5 | 246 | 0.64 | 0.82 | 30 | empty |
Interfaces
3 interfaces between chains.
- A–B · 2546 Ų buried · 34 hydrogen bonds · protein-protein
- B–C · 2516 Ų buried · 36 hydrogen bonds · protein-protein
- A–C · 2456 Ų buried · 28 hydrogen bonds · protein-protein
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q702P1
- Elsewhere: RCSB PDB 7U1I · PDBe 7U1I · UniProt Q702P1
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