Research workbench
[T:Ag+/Hg2+:T--(pH8.5-pH11; 30s in metals)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 8.5 and soaked in pH 11 with Ag+ and Hg2+ for 30s
Analyse [T:Ag+/Hg2+:T--(pH8.5-pH11; 30s in metals)] Metal-mediated DNA base pair in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7TGA
- Type
- DNA
- Length
- 42 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 6.61
- Molecule
- DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'); DNA…
Structure
x-ray diffraction · resolution 6.61 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3') | dna | 21 | — | — |
| B | DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3') | dna | 7 | — | — |
| C | DNA (5'-D(P*GP*GP*CP*TP*GP*CP*T)-3') | dna | 7 | — | — |
| D | DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3') | dna | 7 | — | — |
Interfaces
5 interfaces between chains.
- A–B · 353 Ų buried · 18 hydrogen bonds · nucleic-nucleic
- A–C · 336 Ų buried · 26 hydrogen bonds · nucleic-nucleic
- A–D · 285 Ų buried · 21 hydrogen bonds · nucleic-nucleic
- B–D · 98 Ų buried · 5 hydrogen bonds · nucleic-nucleic
- B–C · 92 Ų buried · 3 hydrogen bonds · nucleic-nucleic
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7TGA · PDBe 7TGA
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