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Labrum-interacting protein from saliva LIPS-2 (34K-2) from Aedes albopictus, selenomethionine derivative

Analyse Labrum-interacting protein from saliva LIPS-2 (34K-2) from Aedes albopictus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7TDR
Type: protein
Length: 289 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.28
Source: Aedes albopictus
Molecule: 34k2 salivary protein
UniProt: Q5MIU2
Ligands: SO4, NO3
Pockets: 2 · best druggability 0.30

Structure

x-ray diffraction · resolution 2.28 · 1 distinct chain · 75% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	34k2 salivary protein	protein	289	75% helix, 0% strand	Q5MIU2

Ligands and binding sites

SO4 · Sulfate ion · ion · 4 copies · chains A
NO3 · Nitrate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	56	0.30	0.76	12	empty
2	66	0.30	0.74	14	empty

Modifications

Observed in the structure: 10 modified, 2 disulfide (engineered, disulfide).

Compared structures

7TDR · Labrum-interacting protein from saliva lips-2 (34K-2) from aedes albopictus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5MIU2
Elsewhere: RCSB PDB 7TDR · PDBe 7TDR · UniProt Q5MIU2

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