Research workbench
Structure of VcINDY-apo
Analyse Structure of VcINDY-apo in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7T9F
- Type
- protein
- Length
- 890 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.23
- Source
- Vibrio cholerae
- Molecule
- DASS family sodium-coupled anion symporter
- UniProt
- A0A0H3AG83
- Pockets
- 20 · best druggability 0.79
Structure
electron microscopy · resolution 3.23 · 1 distinct chain · 76% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DASS family sodium-coupled anion symporter | protein | 445 | 76% helix, 0% strand | A0A0H3AG83 |
Pockets
20 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 92 | 0.79 | 0.99 | 16 | empty |
| 2 | 50 | 0.68 | 0.96 | 17 | empty |
| 3 | 396 | 0.67 | 0.80 | 51 | empty |
| 4 | 387 | 0.66 | 0.79 | 56 | empty |
| 5 | 151 | 0.59 | 0.83 | 33 | empty |
Interfaces
1 interface between chains.
- A–B · 2135 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 7T9F · Structure of vcindy-apo · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3AG83
- Elsewhere: RCSB PDB 7T9F · PDBe 7T9F · UniProt A0A0H3AG83
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