Research workbench
Antibody FenAb208 - fentanyl complex
Analyse Antibody FenAb208 - fentanyl complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7QT2
- Type
- protein
- Length
- 852 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.92
- Source
- Mus musculus
- Molecule
- Antibody heavy chain; Antibody light chain
- Ligands
- 7V7
- Pockets
- 9 · best druggability 0.65
Structure
x-ray diffraction · resolution 1.92 · 4 distinct chains · 7% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Antibody heavy chain | protein | 211 | 9% helix, 53% strand | — |
| B | Antibody light chain | protein | 213 | 7% helix, 51% strand | — |
| C | Antibody heavy chain | protein | 214 | 8% helix, 53% strand | — |
| D | Antibody light chain | protein | 214 | 6% helix, 50% strand | — |
Ligands and binding sites
- 7V7 · N-phenyl-N-[1-(2-phenylethyl)piperidin-4-yl]propanamide · ligand · 2 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 711 | 0.65 | 0.74 | 62 | empty |
| 2 | 125 | 0.62 | 0.86 | 22 | 7V7 |
| 3 | 142 | 0.61 | 0.84 | 25 | 7V7 |
| 4 | 372 | 0.55 | 0.74 | 46 | empty |
| 5 | 96 | 0.42 | 0.78 | 24 | empty |
Interfaces
2 interfaces between chains.
- A–B · 1916 Ų buried · 19 hydrogen bonds · protein-protein
- C–D · 1892 Ų buried · 19 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 9 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7QT2 · PDBe 7QT2
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