Research workbench
Crystal structure of the self-fitted B-DNA decamer D(CCGCCGGCGG)
Analyse Crystal structure of the self-fitted B-DNA decamer D(CCGCCGGCGG) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1QC1
- Type
- DNA
- Length
- 20 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.5
- Molecule
- 5'-D(*CP*CP*GP*CP*CP*GP*GP*CP*GP*G)-3'
- Ligands
- MG
Structure
x-ray diffraction · resolution 2.5 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-D(*CP*CP*GP*CP*CP*GP*GP*CP*GP*G)-3' | dna | 10 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 498 Ų buried · 65 hydrogen bonds · nucleic-nucleic
Compared structures
- 1QC1 · Crystal structure of the self-fitted B-DNA decamer D(CCGCCGGCGG) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1QC1 · PDBe 1QC1
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