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Structure of Alternanthera Mosaic VLP by cryoEM

Analyse Structure of Alternanthera Mosaic VLP by cryoEM in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7OG6
Type: protein + RNA
Length: 204 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 3.3
Source: Alternanthera mosaic virus
Molecule: Coat protein; RNA (5'-R(P*UP*UP*UP*UP*U)-3')
UniProt: Q52Z61
Pockets: 1 · best druggability 0.44

Structure

electron microscopy · resolution 3.3 · 2 distinct chains · 37% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Coat protein	protein	199	37% helix, 1% strand	Q52Z61
R	RNA (5'-R(PUPUPUPUP*U)-3')	rna	5	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	65	0.44	0.81	16	empty

Interfaces

1 interface between chains.

A–R · 641 Å² buried · 7 hydrogen bonds · protein-nucleic

Compared structures

7OG6 · Structure of alternanthera mosaic vlp by cryoem · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q52Z61
Elsewhere: RCSB PDB 7OG6 · PDBe 7OG6 · UniProt Q52Z61

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