Research workbench
RNA-free Ribonuclease P from Halorhodospira halophila
Analyse RNA-free Ribonuclease P from Halorhodospira halophila in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7OG5
- Type
- protein
- Length
- 1,892 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.37
- Source
- Halorhodospira halophila (strain DSM 244 / SL1)
- Molecule
- RNA-free ribonuclease P
- EC
- 3.1.26.5
- UniProt
- A1WZ95
- Pockets
- 20 · best druggability 0.63
Structure
electron microscopy · resolution 3.37 · 3 distinct chains · 57% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H, F, B, D, E, C, G, K, I | RNA-free ribonuclease P (EC 3.1.26.5) | protein | 157 | 55% helix, 8% strand | A1WZ95 |
| J | RNA-free ribonuclease P (EC 3.1.26.5) | protein | 167 | 59% helix, 10% strand | A1WZ95 |
| L, A | RNA-free ribonuclease P (EC 3.1.26.5) | protein | 156 | 56% helix, 12% strand | A1WZ95 |
Pockets
20 pockets found on a 1 Å grid, 15 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 452 | 0.63 | 0.76 | 60 | empty |
| 2 | 178 | 0.62 | 0.84 | 25 | empty |
| 3 | 289 | 0.62 | 0.80 | 38 | empty |
| 4 | 436 | 0.61 | 0.76 | 51 | empty |
| 5 | 108 | 0.59 | 0.86 | 18 | empty |
Interfaces
29 interfaces between chains.
- J–I · 1271 Ų buried · 11 hydrogen bonds · protein-protein
- L–K · 1246 Ų buried · 13 hydrogen bonds · protein-protein
- D–C · 1239 Ų buried · 13 hydrogen bonds · protein-protein
- B–A · 1194 Ų buried · 12 hydrogen bonds · protein-protein
- H–G · 1191 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 7OG5 · RNA-free ribonuclease P from halorhodospira halophila · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1WZ95
- Elsewhere: RCSB PDB 7OG5 · PDBe 7OG5 · UniProt A1WZ95
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.