Research workbench
Crystal structure of (the) VEL1 VEL polymerising domain (I664D mutant)
Analyse Crystal structure of (the) VEL1 VEL polymerising domain (I664D mutant) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7O6W
- Type
- protein
- Length
- 138 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.64
- Source
- Arabidopsis thaliana
- Molecule
- VIN3-like protein 2
- UniProt
- Q9SUM4
- Ligands
- PO4
Structure
x-ray diffraction · resolution 2.64 · 1 distinct chain · 75% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | VIN3-like protein 2 | protein | 69 | 75% helix, 0% strand | Q9SUM4 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 703 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- Q9SUM4 · AlphaFold monomer V2.0 prediction for VIN3-like protein 2 (Q9SUM4) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9SUM4
- Elsewhere: RCSB PDB 7O6W · PDBe 7O6W · UniProt Q9SUM4
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