Research workbench
Crystal structure of the Capsaspora owczarzaki macroH2A macrodomain
Analyse Crystal structure of the Capsaspora owczarzaki macroH2A macrodomain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7NY6
- Type
- protein
- Length
- 189 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.34
- Source
- Capsaspora owczarzaki (strain ATCC 30864)
- Molecule
- Histone macroH2A1.1
- UniProt
- A0A0D2UG83
- Pockets
- 1 · best druggability 0.50
Structure
x-ray diffraction · resolution 1.34 · 1 distinct chain · 39% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Histone macroH2A1.1 | protein | 189 | 39% helix, 21% strand | A0A0D2UG83 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 7 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 157 | 0.50 | 0.79 | 25 | EDO |
Compared structures
- 7NY6 · Crystal structure of the capsaspora owczarzaki MACROH2A macrodomain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0D2UG83
- Elsewhere: RCSB PDB 7NY6 · PDBe 7NY6 · UniProt A0A0D2UG83
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